Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs11729672 chr4:6293838 A/G 1.25E-6 119 25.83 38.58 50.13 KM Plot
THYM rs11732178 chr4:6292643 G/C 8.06E-7 119 25.83 38.83 50.1 KM Plot
THYM rs11732208 chr4:6292716 G/C 1.25E-6 119 25.83 38.58 50.13 KM Plot
THYM rs117442062 chr19:29256823 A/T 0.000286 115 50.28 38.13 18.07 KM Plot
THYM rs11753137 chr6:46854163 A/G 0.000102 119 38.83 59.97 28.43 KM Plot
THYM rs117559631 chr11:3607959 C/T 0.0003 118 40.67 51.53 16 KM Plot
THYM rs11756194 chr6:72877052 C/T 0.000147 118 38.23 50.12 17.77 KM Plot
THYM rs11774280 chr8:50230388 A/C 1.69E-10 119 46.27 50.1 25.83 KM Plot
THYM rs11774357 chr8:50164490 A/C 2.69E-10 118 46.27 50.82 25.83 KM Plot
THYM rs11777418 chr8:50154346 C/T 2.69E-10 118 46.27 50.82 25.83 KM Plot
THYM rs11778908 chr8:50204566 A/G 2.31E-10 119 46.07 50.82 25.83 KM Plot
THYM rs11781957 chr8:50186795 C/G 2.69E-10 118 46.07 51.53 25.83 KM Plot
THYM rs11782068 chr8:50204716 G/A 2.31E-10 119 46.07 50.82 25.83 KM Plot
THYM rs117946634 chr19:29256822 G/T 0.000286 115 50.28 38.13 18.07 KM Plot
THYM rs117979787 chr4:70069639 T/A 5.73E-13 118 39.75 49.6 6 KM Plot